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Meta Analysis
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metaDE R and RRA R
microarray
meta analysis
4.2 years ago
lily
▴ 20
0
votes
1
reply
579
views
Meta_analysis of microarray data
microarray
microarray data
Meta Analysis
platform
updated 5.2 years ago by
James W. MacDonald
65k • written 5.2 years ago by
Jamal
• 0
0
votes
1
reply
1.1k
views
Meta_analysis of different platforms of microarray data
microarray
meta analysis
cancer
Software
R
updated 5.3 years ago by
James W. MacDonald
65k • written 5.3 years ago by
Jamal
• 0
0
votes
0
replies
601
views
how to convert DEGs indices to gene symbols or gene names which i get during meta analysis through MAMA package using pvalcombination function and me…
MAMA
pvalcombination
meta analysis
metaMA
DEGs' indices
6.0 years ago
niteshkumar20sept
• 0
0
votes
1
reply
765
views
meta de r package
meta analysis
6.4 years ago
lily
▴ 20
1
vote
0
replies
1.0k
views
Meta Analysis on CAMERA results
limma
camera
cohen d
meta analysis
7.2 years ago
Andy91
▴ 60
0
votes
1
reply
1.2k
views
meta analysis of clc output(differential expression data )
rnaseq
metaseq
clc output
pvalue
meta analysis
updated 7.3 years ago by
Koki
▴ 10 • written 7.3 years ago by
hassangiahi
• 0
2
votes
3
replies
1.7k
views
combine different GSE on different GPL
annotation
genesymbols
meta analysis
8.0 years ago
wahaha123
• 0
8 results • Page
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Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Answer: More regions in union when increasing DBA$config$mergeOverlap
by
Rory Stark
★ 5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
HAK
• 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
ATpoint
★ 4.1k
Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…
Votes
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
Answer: Fold change calculation in Diffbind vs. DESEQ2?
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
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Rory Stark
★ 5.2k
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tangming2005
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Ian D.
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junhui.li11
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James W. MacDonald
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